5S Ribosomal RNA Databank |
AAA Protein Superfamily Database |
AAindex – Physicochemical properties of peptides |
AARSDB – Aminoacyl-tRNA synthetase sequences |
ACeDB |
ACTIVITY: Functional DNA/RNA site sequences |
ALIGN (Pairwise Sequence Alignment) |
All the Virology Servers in the World |
American Biotechnology Laboratory |
American Laboratory News |
American Type Culture Collection |
Androgen Receptor Gene Mutation Database |
Androgen Receptor Gene Mutations Database |
Arabidopsis thaliana database – TIGR |
Arabinet (AtDB) |
Ares Lab Intron Site – Yeast Spliceosomal Introns |
ARGUS – Harvard University |
ArrayExpress – European Bioinformatics Institute |
Art’s Biotechnology Resource |
ASDB |
Asthma and Allergy Database |
Asthma Gene Database |
ASTRAL – Analysis of protein structures and their sequences |
Atlas |
Atlas of Genetics & Cytogenetics in Oncology & Hematology |
Axeldb |
BASE – BioArray Software Environment |
BioArray News |
BioCommerce Week |
BioCompare |
BIODIDAC Resources for Biology Teaching |
BioInform |
Biology Links – Harvard Dept. of Molecular and Cellular Biology |
BioMagResBank – NMR spectroscopic data from proteins, peptides and nucleic acids |
BioScience Technology |
BioSpace |
Biotechniques |
BLAST (GenBank/EMBL/SwissProt/PIR) |
BLAST2 at EMBL (GenBank/EMBL/SwissProt/PIR) |
Brenda ( The Comprehensive Enzyme Information System ) |
BTKbase – Mutation registry for X-linked agammaglobulinemia |
C. elegans Worm Server |
Caenorhabditis Genetics Centre |
CATH – Hierarchical classification of protein domain structures |
CCRC(CarbBank) – Complex Carbohydrate Structural Database |
Cell Biology Education |
Cell Line Database |
CEPH – Human Genotype Database |
ChemJobs.Net |
Clinical Case Tutorials in Biochemistry |
Clinical Proteomics Research Map |
Clusters of Orthologous Groups (COG) |
Cold Spring Harbor Courses and Meetings |
Collection of mRNA-like non-coding RNAs |
Combined Databases |
Come in |
Comparative Genomics |
COMPEL – Composite Regulatory Elements |
Conferences |
COPE – Cytokines Online Pathfinder Encyclopedia |
Coriell Cell Repositories |
Cre Transgenic Database |
CropNet |
CUTG – Codon usage tables |
CyanoBase |
Cytogenetic Correspondence Linkage Map Note: Requires Java-compliant browser |
Cytokine Gene Polymorphism Database |
Database Indexes |
Database Notification Services |
Database of Genome Sizes (DOGS) |
Database of Germline p53 Mutations |
Database of Macromolecular Movements |
Database on the Structure of Large Subunit Ribosomal RNA |
Database on the Structure of Small Subunit Ribosomal RNA |
Database Sources (downloadable images of sequence databases) |
DBCAT – Index of Molecular Biology Databases |
dbCFC – Cytokine Family EST Database |
DBGET (Integrated Database Retrieval System) |
dbSNP – Single nucleotide polymorphisms |
Decoys ‘R’ Us – Computer-generated protein conformations based on sequence data |
DExH/D Family Database – DEAD-box, DEAH-box and DExH-box proteins |
DNA Data Bank of Japan |
Drug Discovery & Development |
E. coli Genetic Stock Center |
EBI – European Bioinformatics Institute |
EcoGene |
Educational Resources |
EID – Protein-coding, intron-containing genes |
EMBL |
EMBL Virus Structures |
EMGlib |
Endogenous GPCR List |
Enzyme Nomenclature Database |
EPD – Eukaryotic POL II promoters |
ESTHER – Esterases and hydrolase enzymes and relatives |
ExInt – Exon-intron structure of eukaryotic genes |
Expasy Molecular Biology Server |
ExpressDB – Harvard University |
Filarial Genome Network |
FIMM – Functional molecular immunology |
Fish |
FlyBase |
FlyView |
Fundamentals of Sequence Analysis (Caltech) |
FUNPEP – Low-complexity or compositionally-biased protein sequences |
GDB – Human genes and genomic maps |
Gene Expression |
Gene Expression Database (GXD) |
Gene Identification and Structure |
GeneMap – International Radiation Mapping Consortium Human Gene Map |
Gene-map Homology Search |
Genetic Engineering News |
Genetic Maps |
Genome Navigator – Interactive Genome Viewer |
GenomeWeb |
GenomeWeb – Rosalind Franklin Centre for Genomeics Research |
Genomics & Proteomics |
GEO – Gene Expression Omnibus – NCBI |
GOBASE |
Gordon Research Conferences |
GPCRDB – G protein-coupled receptors |
GRAP Mutant Database – Family A G-Protein Coupled Receptors (GRAP) |
Haemophilia B Mutation Database |
HGBASE – Intragenic Sequence Polymorphisms |
HIC-Up – Hetero-Compound Structural Database |
Histone Sequence Database |
HIV |
HIV Molecular Immunology Database |
HIV-RT |
Homeobox Page |
Homeodomain Resource |
HPVSD – Human Papillomavirus Sequence Database |
HSSP – Structural families and alignments |
HUGE – Large (>50 kDa) human proteins and cDNA sequences |
HuGE Index |
HuGeMap – Human genome genetic and physical map data |
Human |
Human Chromosome 1 Database |
Human Gene Mutation Database (HMGD) |
Human Genome Project Database |
Human Genone Project Information |
Human Mitochondrial Genome Database |
Human PAX2 Allelic Variant Database |
Human PAX6 Allelic Variant Database |
Human STS – Human Physical Mapping Project (Whitehead Institute) |
Human Type I & Type III Collagen Mutation Database |
HUM-MOLGEN Communication Forum |
HvrBase – Primate mtDNA control region sequences |
IARC p53 Database |
IDB/IEDB – Intron sequence and evolution |
Image Databases |
Image Library of Biological Macromolecules |
Image Library of Biological Macromolecules |
IMB Jena Image Library |
IMGT – Immunogenetics Database |
IMGT – Immunoglobulin, T cell receptor and MHC sequences |
InBase – Intervening protein sequences (inteins) and motifs |
INCA Recursive BLAST database search (Requires Java) |
INE- Rice |
Insect |
Institute for Laboratory Animal Research – (ILAR) |
Institute for Molecular Virology (U of Wisconson – Madison) |
International Biotechnology Laboratory |
International Laboratory News |
Intronerator |
IXDB – Physical maps of human chromosome X |
Jackson Labs |
Kabat Database – Sequences of proteins of immunological interest |
Keystone Symposia |
Kidney Development Database |
Kimball’s Biology Pages – Definitions for Biology |
KinMutBase – Disease-causing protein kinase mutations |
Lab Velocity |
LGIC – Ligand-gated ion channel sequences, alignments and phylogeny |
LIPIDATE |
LPFC – Library of protein family core structures |
MAD Microarray Database – Jackson Laboratory |
MAGEST – Ascidian (Halocynthia roretzi) gene expression |
MaizeGDB |
MAPS – NIEHS Microarray Group |
MAXD – University of Manchester |
M-CHIPS – German Cancer Research Center |
Membrane Protein Database |
MendelWeb Mendelian Genetics Tutorial |
MEROPS – Peptidase sequences and structures |
MGED – Microarray Gene Expression Data Society |
MHCPEP – MHC-binding peptides |
Microarrays.org – UCDF |
Miscellaneous Tools and Web Sites |
MitBASE |
MitoDat |
MMDB – All three-dimensional structures, linked to NCBI Entrez system |
MODBASE – Comparative protein structure models |
Molecular Biology www Servers |
Molecular Probe Database |
Molecules-R-Us (NIH) |
Molecules-R-Us PDB (NIH) |
Mosquito Genomics |
Mouse |
Mouse Atlas & Gene Expression Database |
Mouse Genome Database |
Mouse Knockout and Mutation Database |
Mouse Tumor Biology Database (MTB) |
Munich Information Center for Protein Sequences |
Munich Information Center for Protein Sequences (MIPS) |
Mutation Databases |
National Human Genome Research Institute |
NCBI Genbank |
NCBI ORF (Open Reading Frame Finder) |
NCGR – National Center for Genome Resources |
NCL Mutations – Neuronal ceroid lipofuscinoses (NCL) genes |
NDB – Nucleic acid-containing structures |
Nobel e-Museum |
Nobel Prize Internet Archive |
NOMAD – UCSF & LBNL |
Non-canonical Base Pair Database |
NRR – Steroid and thyroid hormone receptor superfamily |
NRSub – Bacillus subtilis genome |
Nucleic Acid & Protein Microarray Links |
Nucleic Acid & Protein Sequence Analysis |
Nucleic Acid Databases |
Nucleic Acid Structure Database |
O-GLYCBASE – Glycoproteins and O-linked glycosylation sites |
ONCOMINE – Cancer Microarray Database |
Online Mendelian Inheritance in Man (OMIM) |
ORDB – Olfactory Receptor Database |
Organelle |
Organism & Organelle-Specific Databases |
p53 Databases |
PAHdb – Phenylalanine hydroxylase locus |
Pathology Databases |
Pattern analysis at PBIL |
PDB – Structure data |
PDB (Brookhaven) |
PDB-REPRDB – Representative protein chains, based on PDB entries |
PEDANT – Protein Extraction, Description, and ANalysis Tool |
|
Pfam – Sequence alignments and Markov models of protein domains |
PhosphoBase – Protein phosphorylation sites |
Phytophthora Functional Genomics Database |
PIR – Protein Information Resource |
PIR-ALN – Protein sequence alignments |
PKR – Protein Kinase Resource |
PLACE – Plant cis-acting regulatory elements |
Plant |
Plant mitochondrial tRNAs and tRNA genes |
PMD – Protein mutant data |
Portable Dictionary of the Mouse Genome |
PRESAGE – Protein structures with experimental and predictive annotations |
PRINTS – Protein Motif Fingerprint Database |
PRINTS – Protein sequence motifs and signatures |
ProClass – Families defined by PROSITE patterns and PIR superfamilies |
ProDom – Protein domain families |
Prokaryote |
Prolysis – Proteases |
PROSITE – Protein patterns and profiles |
Protein Databases |
Protein Information Resource (NBRF) |
Protein Motions Database |
Protein Sequence Motifs |
Protein Structure |
Protein Structure Prediction Database |
Proteome Resources |
ProteoMonitor |
ProTherm – Thermodynamic data for proteins |
ProtoMap – Automated hierarchical classification of SWISS-PROT proteins |
Pseudobase – Information on RNA pseudoknots |
PUMA – Princeton University MicroArray Database |
R&D Research and Development |
RAD3 – RNA Abundance Database – University of Pennsylvania |
Radiation Hybrid Database – Radiation hybrid map data |
RB1 Gene Mutation Database |
READ – RIKEN Expression Array Database |
REBASE – Restriction enzymes and methylases |
Receptor Database (RDP) |
RESID – Protein structure modifications |
Ribonuclease P Database |
Ribosomal Database Project (RDP) |
RNA Database Guide |
RNA Modification Database |
RNA Sequences |
RNA World |
Saccharomyces Protein Structural Info |
Sacchromyces Genome Database |
SAPS (Statistical Analysis of Proteins) |
SBASE – Annotated protein domain sequences |
Schizosaccharomyces pombe Genome Project |
SCOP – Familial and structural protein relationships |
Scott’s Botanical Links |
SEALS System for Easy Analysis of Lots of Sequences (NCBI) |
SELEX_DB |
SENTRA – Sensory signal transduction proteins |
SeqPup – Sequence Editor and Analysis |
Sequence, Structure & Function Related Databases |
Small RNA Database |
SMART – Signaling domain sequences |
SRPDB – Signal recognition particle RNA, protein, and receptor sequences |
SRS EBI (SwissProt/PIR/EMBL/TREMBL/Prosite/BLOCKS/Medline/Rebase/DBEST + others) |
Stanford MicroArray Database |
Stanford Protein Microarray Site |
SV40 Large T-Antigen Mutant Database |
SWISS-2DPAGE – 2D-PAGE images and reference maps |
SWISS-3DIMAGE Annotated 3-D Images |
SWISS-PROT (Protein database) |
SWISS-Shop (SwissPROT) |
SYSTERS – Protein clusters |
TeleChem International – Microarray Electronic Library |
TFD – Transcription factors and gene expression |
The Biology Project Web Biology Course (U of Arizona) |
TIGR – The Institute for Genomic Research |
TIGR Gene Indices |
TIGR Microbial Database |
TMpred (Prediction of Transmembrane Regions) |
tmRDB – tmRNA (10Sa RNA) sequences |
tmRNA – tmRNA (10Sa RNA) sequences |
Tooth Development Database |
Trade Publications, News Services and Buyer’s Guides |
TRANSFAC – Transcription factors and binding sites |
Transgenic/Targeted Mutation Database |
Transgenics |
TREMBL Translated Protein Sequence Database (EBI) |
TRIPLES – Transposon-Insertion Phenotypes, Localization and Expression in Saccharomyces |
tRNA Sequences |
TRRD- Regulatory regions of eukaryotic genes |
Unigene |
University of North Carolina Microarray Database |
UTRdb – 5′ and 3′ UTRs of eukaryotic mRNAs |
Viral |
Viroid and Viroid-Like RNA Database |
Visualizations of Viruses |
WebCutter (Restriction Maps) |
Wnt Database – Wnt proteins and phenotypes |
World Health Organization Malaria Database |
Worm |
WWW-Query (EMBL/Genbank/NRSub/Hovergen/HIDB) |
Yale Microarray Database |
Yeast |
YIDB – Yeast nuclear and mitochondrial intron sequences |
Zea Mays – TIGR |
Zebrafish Information Network (ZFIN) |