| 5S Ribosomal RNA Databank |
| AAA Protein Superfamily Database |
| AAindex – Physicochemical properties of peptides |
| AARSDB – Aminoacyl-tRNA synthetase sequences |
| ACeDB |
| ACTIVITY: Functional DNA/RNA site sequences |
| ALIGN (Pairwise Sequence Alignment) |
| All the Virology Servers in the World |
| American Biotechnology Laboratory |
| American Laboratory News |
| American Type Culture Collection |
| Androgen Receptor Gene Mutation Database |
| Androgen Receptor Gene Mutations Database |
| Arabidopsis thaliana database – TIGR |
| Arabinet (AtDB) |
| Ares Lab Intron Site – Yeast Spliceosomal Introns |
| ARGUS – Harvard University |
| ArrayExpress – European Bioinformatics Institute |
| Art’s Biotechnology Resource |
| ASDB |
| Asthma and Allergy Database |
| Asthma Gene Database |
| ASTRAL – Analysis of protein structures and their sequences |
| Atlas |
| Atlas of Genetics & Cytogenetics in Oncology & Hematology |
| Axeldb |
| BASE – BioArray Software Environment |
| BioArray News |
| BioCommerce Week |
| BioCompare |
| BIODIDAC Resources for Biology Teaching |
| BioInform |
| Biology Links – Harvard Dept. of Molecular and Cellular Biology |
| BioMagResBank – NMR spectroscopic data from proteins, peptides and nucleic acids |
| BioScience Technology |
| BioSpace |
| Biotechniques |
| BLAST (GenBank/EMBL/SwissProt/PIR) |
| BLAST2 at EMBL (GenBank/EMBL/SwissProt/PIR) |
| Brenda ( The Comprehensive Enzyme Information System ) |
| BTKbase – Mutation registry for X-linked agammaglobulinemia |
| C. elegans Worm Server |
| Caenorhabditis Genetics Centre |
| CATH – Hierarchical classification of protein domain structures |
| CCRC(CarbBank) – Complex Carbohydrate Structural Database |
| Cell Biology Education |
| Cell Line Database |
| CEPH – Human Genotype Database |
| ChemJobs.Net |
| Clinical Case Tutorials in Biochemistry |
| Clinical Proteomics Research Map |
| Clusters of Orthologous Groups (COG) |
| Cold Spring Harbor Courses and Meetings |
| Collection of mRNA-like non-coding RNAs |
| Combined Databases |
| Come in |
| Comparative Genomics |
| COMPEL – Composite Regulatory Elements |
| Conferences |
| COPE – Cytokines Online Pathfinder Encyclopedia |
| Coriell Cell Repositories |
| Cre Transgenic Database |
| CropNet |
| CUTG – Codon usage tables |
| CyanoBase |
| Cytogenetic Correspondence Linkage Map Note: Requires Java-compliant browser |
| Cytokine Gene Polymorphism Database |
| Database Indexes |
| Database Notification Services |
| Database of Genome Sizes (DOGS) |
| Database of Germline p53 Mutations |
| Database of Macromolecular Movements |
| Database on the Structure of Large Subunit Ribosomal RNA |
| Database on the Structure of Small Subunit Ribosomal RNA |
| Database Sources (downloadable images of sequence databases) |
| DBCAT – Index of Molecular Biology Databases |
| dbCFC – Cytokine Family EST Database |
| DBGET (Integrated Database Retrieval System) |
| dbSNP – Single nucleotide polymorphisms |
| Decoys ‘R’ Us – Computer-generated protein conformations based on sequence data |
| DExH/D Family Database – DEAD-box, DEAH-box and DExH-box proteins |
| DNA Data Bank of Japan |
| Drug Discovery & Development |
| E. coli Genetic Stock Center |
| EBI – European Bioinformatics Institute |
| EcoGene |
| Educational Resources |
| EID – Protein-coding, intron-containing genes |
| EMBL |
| EMBL Virus Structures |
| EMGlib |
| Endogenous GPCR List |
| Enzyme Nomenclature Database |
| EPD – Eukaryotic POL II promoters |
| ESTHER – Esterases and hydrolase enzymes and relatives |
| ExInt – Exon-intron structure of eukaryotic genes |
| Expasy Molecular Biology Server |
| ExpressDB – Harvard University |
| Filarial Genome Network |
| FIMM – Functional molecular immunology |
| Fish |
| FlyBase |
| FlyView |
| Fundamentals of Sequence Analysis (Caltech) |
| FUNPEP – Low-complexity or compositionally-biased protein sequences |
| GDB – Human genes and genomic maps |
| Gene Expression |
| Gene Expression Database (GXD) |
| Gene Identification and Structure |
| GeneMap – International Radiation Mapping Consortium Human Gene Map |
| Gene-map Homology Search |
| Genetic Engineering News |
| Genetic Maps |
| Genome Navigator – Interactive Genome Viewer |
| GenomeWeb |
| GenomeWeb – Rosalind Franklin Centre for Genomeics Research |
| Genomics & Proteomics |
| GEO – Gene Expression Omnibus – NCBI |
| GOBASE |
| Gordon Research Conferences |
| GPCRDB – G protein-coupled receptors |
| GRAP Mutant Database – Family A G-Protein Coupled Receptors (GRAP) |
| Haemophilia B Mutation Database |
| HGBASE – Intragenic Sequence Polymorphisms |
| HIC-Up – Hetero-Compound Structural Database |
| Histone Sequence Database |
| HIV |
| HIV Molecular Immunology Database |
| HIV-RT |
| Homeobox Page |
| Homeodomain Resource |
| HPVSD – Human Papillomavirus Sequence Database |
| HSSP – Structural families and alignments |
| HUGE – Large (>50 kDa) human proteins and cDNA sequences |
| HuGE Index |
| HuGeMap – Human genome genetic and physical map data |
| Human |
| Human Chromosome 1 Database |
| Human Gene Mutation Database (HMGD) |
| Human Genome Project Database |
| Human Genone Project Information |
| Human Mitochondrial Genome Database |
| Human PAX2 Allelic Variant Database |
| Human PAX6 Allelic Variant Database |
| Human STS – Human Physical Mapping Project (Whitehead Institute) |
| Human Type I & Type III Collagen Mutation Database |
| HUM-MOLGEN Communication Forum |
| HvrBase – Primate mtDNA control region sequences |
| IARC p53 Database |
| IDB/IEDB – Intron sequence and evolution |
| Image Databases |
| Image Library of Biological Macromolecules |
| Image Library of Biological Macromolecules |
| IMB Jena Image Library |
| IMGT – Immunogenetics Database |
| IMGT – Immunoglobulin, T cell receptor and MHC sequences |
| InBase – Intervening protein sequences (inteins) and motifs |
| INCA Recursive BLAST database search (Requires Java) |
| INE- Rice |
| Insect |
| Institute for Laboratory Animal Research – (ILAR) |
| Institute for Molecular Virology (U of Wisconson – Madison) |
| International Biotechnology Laboratory |
| International Laboratory News |
| Intronerator |
| IXDB – Physical maps of human chromosome X |
| Jackson Labs |
| Kabat Database – Sequences of proteins of immunological interest |
| Keystone Symposia |
| Kidney Development Database |
| Kimball’s Biology Pages – Definitions for Biology |
| KinMutBase – Disease-causing protein kinase mutations |
| Lab Velocity |
| LGIC – Ligand-gated ion channel sequences, alignments and phylogeny |
| LIPIDATE |
| LPFC – Library of protein family core structures |
| MAD Microarray Database – Jackson Laboratory |
| MAGEST – Ascidian (Halocynthia roretzi) gene expression |
| MaizeGDB |
| MAPS – NIEHS Microarray Group |
| MAXD – University of Manchester |
| M-CHIPS – German Cancer Research Center |
| Membrane Protein Database |
| MendelWeb Mendelian Genetics Tutorial |
| MEROPS – Peptidase sequences and structures |
| MGED – Microarray Gene Expression Data Society |
| MHCPEP – MHC-binding peptides |
| Microarrays.org – UCDF |
| Miscellaneous Tools and Web Sites |
| MitBASE |
| MitoDat |
| MMDB – All three-dimensional structures, linked to NCBI Entrez system |
| MODBASE – Comparative protein structure models |
| Molecular Biology www Servers |
| Molecular Probe Database |
| Molecules-R-Us (NIH) |
| Molecules-R-Us PDB (NIH) |
| Mosquito Genomics |
| Mouse |
| Mouse Atlas & Gene Expression Database |
| Mouse Genome Database |
| Mouse Knockout and Mutation Database |
| Mouse Tumor Biology Database (MTB) |
| Munich Information Center for Protein Sequences |
| Munich Information Center for Protein Sequences (MIPS) |
| Mutation Databases |
| National Human Genome Research Institute |
| NCBI Genbank |
| NCBI ORF (Open Reading Frame Finder) |
| NCGR – National Center for Genome Resources |
| NCL Mutations – Neuronal ceroid lipofuscinoses (NCL) genes |
| NDB – Nucleic acid-containing structures |
| Nobel e-Museum |
| Nobel Prize Internet Archive |
| NOMAD – UCSF & LBNL |
| Non-canonical Base Pair Database |
| NRR – Steroid and thyroid hormone receptor superfamily |
| NRSub – Bacillus subtilis genome |
| Nucleic Acid & Protein Microarray Links |
| Nucleic Acid & Protein Sequence Analysis |
| Nucleic Acid Databases |
| Nucleic Acid Structure Database |
| O-GLYCBASE – Glycoproteins and O-linked glycosylation sites |
| ONCOMINE – Cancer Microarray Database |
| Online Mendelian Inheritance in Man (OMIM) |
| ORDB – Olfactory Receptor Database |
| Organelle |
| Organism & Organelle-Specific Databases |
| p53 Databases |
| PAHdb – Phenylalanine hydroxylase locus |
| Pathology Databases |
| Pattern analysis at PBIL |
| PDB – Structure data |
| PDB (Brookhaven) |
| PDB-REPRDB – Representative protein chains, based on PDB entries |
| PEDANT – Protein Extraction, Description, and ANalysis Tool |
|
|
| Pfam – Sequence alignments and Markov models of protein domains |
| PhosphoBase – Protein phosphorylation sites |
| Phytophthora Functional Genomics Database |
| PIR – Protein Information Resource |
| PIR-ALN – Protein sequence alignments |
| PKR – Protein Kinase Resource |
| PLACE – Plant cis-acting regulatory elements |
| Plant |
| Plant mitochondrial tRNAs and tRNA genes |
| PMD – Protein mutant data |
| Portable Dictionary of the Mouse Genome |
| PRESAGE – Protein structures with experimental and predictive annotations |
| PRINTS – Protein Motif Fingerprint Database |
| PRINTS – Protein sequence motifs and signatures |
| ProClass – Families defined by PROSITE patterns and PIR superfamilies |
| ProDom – Protein domain families |
| Prokaryote |
| Prolysis – Proteases |
| PROSITE – Protein patterns and profiles |
| Protein Databases |
| Protein Information Resource (NBRF) |
| Protein Motions Database |
| Protein Sequence Motifs |
| Protein Structure |
| Protein Structure Prediction Database |
| Proteome Resources |
| ProteoMonitor |
| ProTherm – Thermodynamic data for proteins |
| ProtoMap – Automated hierarchical classification of SWISS-PROT proteins |
| Pseudobase – Information on RNA pseudoknots |
| PUMA – Princeton University MicroArray Database |
| R&D Research and Development |
| RAD3 – RNA Abundance Database – University of Pennsylvania |
| Radiation Hybrid Database – Radiation hybrid map data |
| RB1 Gene Mutation Database |
| READ – RIKEN Expression Array Database |
| REBASE – Restriction enzymes and methylases |
| Receptor Database (RDP) |
| RESID – Protein structure modifications |
| Ribonuclease P Database |
| Ribosomal Database Project (RDP) |
| RNA Database Guide |
| RNA Modification Database |
| RNA Sequences |
| RNA World |
| Saccharomyces Protein Structural Info |
| Sacchromyces Genome Database |
| SAPS (Statistical Analysis of Proteins) |
| SBASE – Annotated protein domain sequences |
| Schizosaccharomyces pombe Genome Project |
| SCOP – Familial and structural protein relationships |
| Scott’s Botanical Links |
| SEALS System for Easy Analysis of Lots of Sequences (NCBI) |
| SELEX_DB |
| SENTRA – Sensory signal transduction proteins |
| SeqPup – Sequence Editor and Analysis |
| Sequence, Structure & Function Related Databases |
| Small RNA Database |
| SMART – Signaling domain sequences |
| SRPDB – Signal recognition particle RNA, protein, and receptor sequences |
| SRS EBI (SwissProt/PIR/EMBL/TREMBL/Prosite/BLOCKS/Medline/Rebase/DBEST + others) |
| Stanford MicroArray Database |
| Stanford Protein Microarray Site |
| SV40 Large T-Antigen Mutant Database |
| SWISS-2DPAGE – 2D-PAGE images and reference maps |
| SWISS-3DIMAGE Annotated 3-D Images |
| SWISS-PROT (Protein database) |
| SWISS-Shop (SwissPROT) |
| SYSTERS – Protein clusters |
| TeleChem International – Microarray Electronic Library |
| TFD – Transcription factors and gene expression |
| The Biology Project Web Biology Course (U of Arizona) |
| TIGR – The Institute for Genomic Research |
| TIGR Gene Indices |
| TIGR Microbial Database |
| TMpred (Prediction of Transmembrane Regions) |
| tmRDB – tmRNA (10Sa RNA) sequences |
| tmRNA – tmRNA (10Sa RNA) sequences |
| Tooth Development Database |
| Trade Publications, News Services and Buyer’s Guides |
| TRANSFAC – Transcription factors and binding sites |
| Transgenic/Targeted Mutation Database |
| Transgenics |
| TREMBL Translated Protein Sequence Database (EBI) |
| TRIPLES – Transposon-Insertion Phenotypes, Localization and Expression in Saccharomyces |
| tRNA Sequences |
| TRRD- Regulatory regions of eukaryotic genes |
| Unigene |
| University of North Carolina Microarray Database |
| UTRdb – 5′ and 3′ UTRs of eukaryotic mRNAs |
| Viral |
| Viroid and Viroid-Like RNA Database |
| Visualizations of Viruses |
| WebCutter (Restriction Maps) |
| Wnt Database – Wnt proteins and phenotypes |
| World Health Organization Malaria Database |
| Worm |
| WWW-Query (EMBL/Genbank/NRSub/Hovergen/HIDB) |
| Yale Microarray Database |
| Yeast |
| YIDB – Yeast nuclear and mitochondrial intron sequences |
| Zea Mays – TIGR |
| Zebrafish Information Network (ZFIN) |
